# Illumina FFPE DNA Prep with Exome 2.5

## Illumina FFPE DNA Prep with Exome 2.5

- [Illumina FFPE DNA Prep with Exome 2.5 Enrichment](https://help.ffpe-exomev2p5.illumina.com/readme.md)
- [Demo Data](https://help.ffpe-exomev2p5.illumina.com/demo-data.md)
- [Resource Files](https://help.ffpe-exomev2p5.illumina.com/resource-files.md)
- [DRAGEN v4.4.6 T/N Recipe](https://help.ffpe-exomev2p5.illumina.com/tumor-normal-software-guides/dragen-v4.3.17-recipe.md)
- [BaseSpace Sequence Hub (BSSH) T/N](https://help.ffpe-exomev2p5.illumina.com/tumor-normal-software-guides/page.md): Detailed instructions on how to configure the DRAGEN command-line for analyzing paired tumor-normal samples processed with the Illumina FFPE DNA Prep with Exome 2.5 Enrichment.
- [Illumina Connected Analytics (ICA) T/N](https://help.ffpe-exomev2p5.illumina.com/tumor-normal-software-guides/page-2.md)
- [Microsatellite Instability (MSI)](https://help.ffpe-exomev2p5.illumina.com/additional-information/microsatellite-instability-msi.md): Microsatellite Instability (MSI) If MSI values are needed ahead of software updates, it is recommend to calculate MSI on the tumor fastq files in tumor-only mode in a separate DRAGEN analysis. Tumor-o
- [Quick check of run quality](https://help.ffpe-exomev2p5.illumina.com/additional-information/quick-check-of-run-quality.md)
- [Spike-in panels](https://help.ffpe-exomev2p5.illumina.com/additional-information/spike-in-panels.md)
- [Germline variants](https://help.ffpe-exomev2p5.illumina.com/additional-information/germline-variants.md)
- [Troubleshooting the analysis](https://help.ffpe-exomev2p5.illumina.com/additional-information/troubleshooting-the-analysis.md): Potential changes to the analysis settings to improve performance when analyzing Illumina FFPE DNA Prep with Exome 2.5 Enrichment.
- [Tumor-only analysis](https://help.ffpe-exomev2p5.illumina.com/additional-information/tumor-only-analysis.md)


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